I use Parrbond and/or AcrylR for sealing the overlapped joints in the aluminum sheets. (1/8" or less)
I use TremPro 635 around doors, windows, or other openings on the sides of the trailer and occasionally for items on the roof.
I use Dicor for sealing the perimeter of fans, vents, skylights, etc. on the roof.
This is a link to a source.
Search Results : Out-of-Doors Mart!, More Airstream Parts on-line than anyone!
I have only used ODM for a source for sheet metal, but there are many. Use the search function to find other ideas.
ps: DO NOT USE SILICONE CAULK !!!!!