It is best if you connect your trailer as you have described, positive of one battery and negative of the other. I think this allows for balanced charging and discharging of the batteries and that is how all factory installations of 2 batteries are done, whether they are 6v or
12v.
The several cables that you are seeing are the positive and negative power cables connected to the trailers converter/charger and the smaller positive and negative wires are connected to your inverter. There is probably an even smaller red wire that is for your front jack. If you have solar, then you have even more wires than these, positive and negative coming to the batteries from the charge controller.