There should be only one shunt in the system, as the BMV-702 only uses one and the Blue Solar charge controllers have none. The settings for your BMV-702 should be properly set for your battery bank with total capacity, tail current etc.
The Blue Solar controllers are similarly set for the absorb and float charge voltages and charging duration. These are easily done thru the Victron Connect app.
The readings from the BMV-702 should be consistent regardless of which solar controller you are using, but the actual voltages and charge amperages shown on the solar controllers will vary dependent on the number of panels connected to each system.
If you purchased the system from AM Solar, a quick call to their tech support team will probably resolve any monitoring inconsistencies.